PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.HA1UL
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C3H
Protein Properties Length: 411aa    MW: 45012.5 Da    PI: 8.506
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.HA1ULgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-115581127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                 ++++ C+++ rtG C++G++C+F+H+p
  Araip.HA1UL 55 PGEPDCSYYIRTGLCRFGATCRFNHPP 81
                 5789*********************97 PP

2zf-CCCH32.71.3e-1091110827
                  GGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                  ++++tGtCk+G++CkF+H++
  Araip.HA1UL  91 YYLKTGTCKFGATCKFHHPR 110
                  8*****************96 PP

3zf-CCCH37.25e-12132156327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  +++C +++rtG+Ck+G++CkF+H++
  Araip.HA1UL 132 EAECAYYLRTGQCKFGNTCKFHHPQ 156
                  689********************97 PP

4zf-CCCH382.8e-12272298127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C+f+++tG Ck+G+ C+F+H++
  Araip.HA1UL 272 PGQPECQFYMKTGDCKFGAVCRFHHPR 298
                  5789*********************96 PP

5zf-CCCH38.22.4e-12318344127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++lC f++r+G+Ck+G++CkF H++
  Araip.HA1UL 318 PGEPLCVFYSRYGICKFGPSCKFDHPM 344
                  589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-45481IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9765582IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-85681IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-55982IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.7E-46080IPR000571Zinc finger, CCCH-type
SMARTSM003560.4583110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.49391111IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-891110IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-491110IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159129157IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-6131157IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10132156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4135155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596271299IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6271298IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9273298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.55E-6275301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.3E-5277299IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821317345IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7317344IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9319344IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5320344IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4322342IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MLQFPCPVKA SLKDGALYAT AMKLTCSYDI ISDAMWQMNL RSSETMEPGP YPEHPGEPDC  60
SYYIRTGLCR FGATCRFNHP PNRKLVETHI YYLKTGTCKF GATCKFHHPR DKAGIAGRVA  120
LNILGYPLRP NEAECAYYLR TGQCKFGNTC KFHHPQPSNM FSCLSHRSFS NNARSXSSSS  180
YIASPRWQGP SSYASLILPQ GVVSVPGWGA YNGQMGSDST QQSVGNGQTY ASSRQGESAN  240
AGSQGAYSQY RSGSVPVGFY ALQRENIFPE RPGQPECQFY MKTGDCKFGA VCRFHHPRER  300
LIPAPDCLLS PIGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMGIFAYN MSTSPSADAS  360
GRRMLGSSSG TAALNLSPEG LVESGSAKPR RLSLSETRQL PSSDDNIDDE G
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016194000.10.0PREDICTED: zinc finger CCCH domain-containing protein ZFN-like
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1L6B10.0I1L6B1_SOYBN; Uncharacterized protein
STRINGGLYMA09G38650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-148zinc finger protein 1